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GinkgoDB

Ginkgo Database - Quadrat

Ginkgo Database

What is GinkgoDB?

Ginkgo DB is a multiscale comprehensive germplasm database for Ginkgo biloba having been developed since 2020. The multi-omic genetic database and occurrence database are two core components of GinkgoDB. Around them, a series of databases like growth monitoring, phenological observation, environment data, as well as photos and articals about ginkgo have been being organized and posted on our site.

GinkgoDB aims at sharing with the world the results of research on the evolutionary ecology of ginkgo and empowering the conservation of wild population of this fascinating species.

This work was supported by National Key Research and Development Program of China (No. 2017YFA0605104) and the National Natural Science Foundation of China (No. 31870190, 32071484).

Quadrat database

We started construct quadrats for wild ginkgo populations in 2015. Since 2019, more than 20 permanent quadrat has been constructed. We investigated all the tree, shrub and herb species in the quadrat in detail. What's more, we have been monitoring the temperature and humidity changes in the quadrat with some electronic automatic monitors.

We numbered and recorded the growth condition parameters like DBH, height, crown width, crown condition for trees with DBH greater than 1cm. For trees with DBH greater than 5cm, we made metal bands (dendrometers) so that we can record their growth rate.

The ginkgo trees in those quadrats are the focus of our study. We collected specimens, seeds, molecular samples and other biological samples of those ginkgo trees. And their functional traits have been measured. Further more, We collected some soil samples near their root for research.

To protect the wild ginkgo germplasm resources, more quadrats will be constructed in the future.

How to cite

Researchers who wish to use GinkgoDB are encouraged to refer to our publication or specific data sources :

  1. Kai-Jie Gu, Chen-Feng Lin, Jun-Jie Wu, Yun-Peng Zhao* (2022) GinkgoDB: an ecological genome database for the living fossil, Ginkgo biloba. Database 2022, baac046
    doi: 10.1093/database/baac046

References
  1. H.C. Dawkins & D.R.B Field (2013) A Long-term Surveillance System for British Woodland Vegetation. Oxford: Department of Forestry, Oxford University

About our group

We study evolutionary ecology of relict tree species using the living fossil Ginkgo biloba (maidenhair tree) as major study systems by integrating field observatory and monitoring data, multi-omic data and experimental data. The key question We have been focused on is the evolutionary causes and genetic bases underlying regulation mechanisms of population size and distribution with an emphasis on three key ecological processes, i.e., reproduction, morality and dispersal. The specific questions include response strategies to global climate change and adaptive evolution, sex chromosome evolution and sexual dimorphism, evolution of secondary metabolites, plant-microbial coupling and coevolution.

Group leader: Prof. Dr. Yun-Peng Zhao, E-mail: ypzhao@zju.edu.cn, homepage: person.zju.edu.cn/en/ypzhao
Web Designer and Developer: Chen-feng Lin, E-mail: 3170105188@zju.edu.cn
Data support: Kai-jie Gu, E-mail: gkj95@zju.edu.cn; Jun-Jie Wu, E-mail: jjwujay@zju.edu.cn

Contact us

E-mail: iginkgo@zju.edu.cn

Address: 浙江省 杭州市 余杭塘路866号 浙江大学紫金港校区生命科学学院 植物系统进化与生物多样性研究室,310058
Lab of Systematic & Evolutionary Botany and Biodiversity, College of Life Science, Zhejiang University, 866 Yuhangtang Rd, Hangzhou 310058, P.R. China